Basic Information
Locus ID:
AH01.871
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 6967184 | 6970873 | - | AH01.871 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 52,314.53 Da | 48.73 | 58.83 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 290 | 316 | 4.6E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 329 | 355 | 4.7E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 281 | 317 | 3.53E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 321 | 357 | 2.62E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 357 | 390 | 3.57E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 319 | 356 | 1.4E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 280 | 318 | 8.4E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 357 | 390 | 1.7E-9 | - |
| SMART | SM00547 | zf_4 | 329 | 353 | 2.9E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 362 | 386 | 2.0E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 290 | 314 | 8.5E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 288 | 317 | 9.325869 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 360 | 389 | 9.472667 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 327 | 356 | 10.048569 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 292 | 311 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 364 | 383 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 331 | 350 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 278 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 5.54E-43 |
| RefSeq | XP_025796160.1 | zinc finger protein VAR3, chloroplastic-like [Panicum hallii] | 1.47E-212 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 5.35E-15 | |
| TrEMBL | A0A2T7C228 | Zinc finger protein VAR3, chloroplastic OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G116200 PE=4 SV=1 | 1.28E-213 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology