Basic Information
Locus ID:
AH01.870
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 6953286 | 6957218 | - | AH01.870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 42,947.49 Da | 45.74 | 68.83 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 304 | 330 | 9.2E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 271 | 298 | 1.5E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 301 | 332 | 4.79E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 266 | 299 | 2.51E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 332 | 365 | 3.92E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 299 | 331 | 2.1E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 332 | 365 | 1.0E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 262 | 298 | 9.8E-11 | - |
| SMART | SM00547 | zf_4 | 304 | 328 | 1.7E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 337 | 361 | 9.3E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 273 | 297 | 0.0019 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 271 | 300 | 9.913063 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 335 | 364 | 9.483959 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 302 | 331 | 10.10503 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 275 | 294 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 306 | 325 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 339 | 358 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 4.17E-46 |
| RefSeq | XP_004982017.1 | zinc finger protein VAR3, chloroplastic [Setaria italica] | 5.35E-154 |
| TrEMBL | A0A2T7C228 | Zinc finger protein VAR3, chloroplastic OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G116200 PE=4 SV=1 | 1.39E-153 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology