Basic Information
Locus ID:
AH01.845
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 6770831 | 6777774 | - | AH01.845 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.24 | 118,659.31 Da | 68.76 | 66.44 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 310 | 333 | 3.5E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 266 | 291 | 9.9E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 259 | 290 | 3.92E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 305 | 336 | 2.04E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 302 | 341 | 4.1E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 258 | 294 | 1.3E-12 | - |
| SMART | SM00547 | zf_4 | 312 | 336 | 1.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 268 | 292 | 1.9E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 345 | 370 | 1.0 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 310 | 339 | 9.393621 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 266 | 295 | 9.788849 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 270 | 289 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 314 | 333 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 923 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1083 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 784 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 8.24E-71 |
| RefSeq | XP_034570457.1 | uncharacterized protein LOC117835185 [Setaria viridis] | 7.8E-285 |
| TrEMBL | A0A1E5V1M6 | Zinc finger protein VAR3, chloroplastic OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0019929 PE=4 SV=1 | 2.01E-288 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology