Basic Information
Locus ID:
AH01.830
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 6592621 | 6596544 | + | AH01.830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 44,903.27 Da | 45.96 | 81.93 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 138 | 206 | 1.9399E-30 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 139 | 201 | 8.4E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 214 | 1.36E-10 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 134 | 205 | 3.3E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 137 | 206 | 3.3E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 210 | 11.127682 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 94 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 2.37E-85 |
| RefSeq | XP_022679280.1 | binding partner of ACD11 1 isoform X1 [Setaria italica] | 1.87E-180 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 8.27E-60 | |
| TrEMBL | A0A1E5WIY1 | Binding partner of ACD11 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0001652 PE=4 SV=1 | 2.74E-180 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology