Basic Information
Locus ID:
AH01.816
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 6464422 | 6469821 | + | AH01.816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 120,403.83 Da | 55.90 | 76.34 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 1052 | 1096 | 6.159E-22 | - |
| Pfam | PF00628 | PHD-finger | 1051 | 1096 | 1.1E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1046 | 1096 | 1.2E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1038 | 1099 | 1.2E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1051 | 1097 | 3.9E-6 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1052 | 1096 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 306 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66170.1 | RING/FYVE/PHD zinc finger superfamily protein. encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. | 2.74E-141 |
| RefSeq | XP_025795497.1 | PHD finger protein MALE MEIOCYTE DEATH 1-like [Panicum hallii] | 0 |
| Q7X6Y7 | PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana OX=3702 GN=MMD1 PE=1 SV=1 | 2.65E-140 | |
| TrEMBL | A0A2S3IIN9 | PHD domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G112900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology