Basic Information
Locus ID:
AH01.781
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 6117085 | 6118507 | - | AH01.781 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 42,392.32 Da | 35.58 | 88.70 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 159 | 344 | 3.3E-34 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 151 | 383 | 1.57E-39 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 140 | 306 | 5.5E-33 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 295 | 315 | 1.0E-4 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 208 | 223 | 1.0E-4 | IPR017989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 105 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025798193.1 | uncharacterized protein LOC112878024 [Panicum hallii] | 5.18E-86 |
| TrEMBL | A0A3L6SAW2 | Protein synthesis inhibitor I OS=Panicum miliaceum OX=4540 GN=C2845_PM02G00250 PE=3 SV=1 | 1.09E-107 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.781, CH01.959 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014456 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G452200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1AG041330 |
| Poaceae | Triticum aestivum | 2 | TraesCS1A02G277900.1.cds1, TraesCS1B02G286800.1.cds1 |