Basic Information
Locus ID:
AH01.597
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 4494116 | 4504337 | + | AH01.597 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 164,112.70 Da | 51.32 | 73.11 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 1335 | 1361 | 0.012 | IPR002885 |
| Pfam | PF17830 | STI1 domain | 681 | 728 | 1.7E-7 | IPR041243 |
| Pfam | PF13041 | PPR repeat family | 1070 | 1114 | 2.8E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1260 | 1308 | 2.1E-7 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 977 | 1004 | 6.1E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 951 | 976 | 3.6E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1403 | 1429 | 0.69 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1162 | 1202 | 6.2E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1010 | 1039 | 1.4E-4 | IPR002885 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 756 | 846 | 7.5E-12 | IPR020683 |
| SUPERFAMILY | SSF48452 | TPR-like | 1039 | 1425 | 5.32E-7 | IPR011990 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 751 | 873 | 3.26E-30 | IPR036770 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 231 | 487 | 1.47E-23 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1118 | 1219 | 5.7E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1229 | 1459 | 5.7E-36 | IPR011990 |
| Gene3D | G3DSA:1.25.40.20 | - | 753 | 875 | 7.4E-35 | IPR036770 |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 499 | 4.1E-22 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1036 | 1100 | 2.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 889 | 1026 | 1.2E-21 | IPR011990 |
| SMART | SM00248 | ANK_2a | 783 | 812 | 1.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 750 | 779 | 220.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 816 | 845 | 9.1E-5 | IPR002110 |
| SMART | SM00320 | WD40_4 | 226 | 265 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 365 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 410 | 7.6 | IPR001680 |
| SMART | SM00248 | ANK_2a | 849 | 880 | 270.0 | IPR002110 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 951 | 979 | 8.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 979 | 1004 | 5.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1299 | 1332 | 0.0025 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1041 | 1069 | 1.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1165 | 1198 | 8.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1072 | 1102 | 1.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1135 | 1164 | 1.2E-4 | IPR002885 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 783 | 815 | 10.179323 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1039 | 1069 | 11.191545 | IPR002885 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 783 | 815 | 11.54089 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 816 | 848 | 11.59431 | IPR002110 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1261 | 1295 | 10.270796 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1132 | 1166 | 11.443655 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 977 | 1011 | 10.533867 | IPR002885 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 816 | 847 | 10.709951 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1070 | 1104 | 12.145178 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 494 | - | - |
| Coils | Coil | Coil | 72 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50970.1 | transducin family protein / WD-40 repeat family protein. | 2.94E-117 |
| RefSeq | XP_025794908.1 | U5 small nuclear ribonucleoprotein 40 kDa protein [Panicum hallii] | 1.13E-240 |
| Q9SAR5 | Ankyrin repeat domain-containing protein 2A OS=Arabidopsis thaliana OX=3702 GN=AKR2A PE=1 SV=2 | 1.11E-55 | |
| TrEMBL | A0A1D6LC16 | Pentatricopeptide repeat-containing protein mitochondrial OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d034865 PE=4 SV=1 | 2.05E-260 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18379 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13943 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001525 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30848, Sbi_jg58417 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28294 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004870 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54954, Sgl60213 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007564, gene:ENSEOMG00000023546 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018080, CQ.Regalona.r1.5BG0019230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012590 |
| Apiaceae | Apium graveolens | 3 | Ag4G00025, Ag4G00051, Ag9G01226 |
| Arecaceae | Cocos nucifera | 2 | contig69058962G000010, scaffold030607G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715359 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1628.V1.1, AsparagusV1_10.386.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G02735 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G19920.1, AT5G50970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013007m.g.v1.0, Thhalv10013209m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g13140.v2.2, Sp6g24460.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042800.2N, BniB05g043450.2N, BniB08g018260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1936 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g00020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11840 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.556 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24229, Lb4G25721, Lb5G27028 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.597, BH01.129, CH09.3330 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0253150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0535010.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G029050, Oco06G030070 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G008900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106584, Pt_Chr0106609 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G000350, Chr12G031770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G861400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG049630, gene_TRIDC5BG081340 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G328700.2, TraesCS5B02G542700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb064630_P001, Zm00001eb210690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16760 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2357, Zma_g45 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2733, evm.TU.LG02.157, evm.TU.LG09.1395 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g00030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.303 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29055 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6907 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2002 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000403 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14717 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1305 |
| Salicaceae | Populus euphratica | 4 | populus_peu28958, populus_peu28959, populus_peu30366 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603604, gene-LOC132633158 |
| Solanaceae | Solanum chilense | 1 | SOLCI005895300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005175, gene-LOC107013032 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16051 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0758 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07820.v3.1 |