halophFGD

Basic Information

Locus ID: AH01.564

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: DNA-directed RNA polymerases

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH01	4216121	4220805	-	AH01.564

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.54	62,262.56 Da	37.69	68.64	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03870	RNA polymerase Rpb8	406	491	2.8E-26	IPR005570
Pfam	PF07893	Protein of unknown function (DUF1668)	4	386	1.3E-90	IPR012871
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	407	491	2.91E-22	IPR012340
Gene3D	G3DSA:2.40.50.140	-	404	508	3.8E-29	-
SMART	SM00658	rpol8neu	385	520	2.8E-18	IPR005570
MobiDBLite	mobidb-lite	consensus disorder prediction	492	543	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	502	543	-	-

Gene Ontology

Biological Process:

GO:0006351 (DNA-templated transcription)

KEGG Pathway

KO Term:

K03016 (DNA-directed RNA polymerases I, II, and III subunit RPABC3)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase) map04623 (Cytosolic DNA-sensing pathway)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G59600.1	RNA polymerase Rpb8. One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II, IV and V; homologous to budding yeast RPB8. Probably redundant with At1g54250.	1.75E-29
RefSeq	XP_025821357.1	uncharacterized protein LOC112897297 [Panicum hallii]	1.22E-78
Swiss-Prot	Q9M1A8	DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1	1.69E-28
TrEMBL	A0A835FKS4	Uncharacterized protein OS=Digitaria exilis OX=1010633 GN=HU200_009514 PE=4 SV=1	6.78E-157

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	26	AH01.5374, AH01.549, AH01.564, AH03.3691, AH03.3704, CH01.12 ... BH01.166, BH01.246, BH01.369, BH03.3974, BH03.3977, BH07.590, CH02.3353, CH03.4141, CH03.4142, CH03.4238, CH03.4239, CH03.4240, CH03.4242, CH03.4244, CH03.4251, CH03.4252, CH07.444, CH07.460, CH09.2578, CH09.2601
Poaceae	Eleusine coracana subsp. coracana	22	gene-QOZ80_3AG0208510, gene-QOZ80_3AG0210820 ... gene-QOZ80_3BG0253610, gene-QOZ80_3BG0256020, gene-QOZ80_7AG0574530, gene-QOZ80_7AG0576210, gene-QOZ80_7AG0577100, gene-QOZ80_7AG0577120, gene-QOZ80_7AG0577150, gene-QOZ80_7AG0577170, gene-QOZ80_7AG0577180, gene-QOZ80_7AG0577220, gene-QOZ80_7BG0605930, gene-QOZ80_7BG0607650, gene-QOZ80_7BG0608510, gene-QOZ80_7BG0608520, gene-QOZ80_7BG0608550, gene-QOZ80_7BG0608560, gene-QOZ80_7BG0608570, gene-QOZ80_7BG0608610, gene-QOZ80_7BG0608620, gene-QOZ80_7BG0608640
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0208490.1.CDS1 ... HORVU.MOREX.r3.3HG0294740.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_002553, gene-QYE76_002781, gene-QYE76_037292 ... gene-QYE76_059641, gene-QYE76_059651, gene-QYE76_059653, gene-QYE76_063289, gene-QYE76_063310
Poaceae	Oryza coarctata	7	Oco05G002870, Oco06G002880, Oco06G025610, Oco09G001310 ... Oco13G014260, Oco14G014700, Oco22G000390
Poaceae	Oryza sativa	18	LOC_Os01g70280.1, LOC_Os01g70290.1, LOC_Os03g01420.1 ... LOC_Os03g01490.1, LOC_Os03g05370.1, LOC_Os03g05380.1, LOC_Os04g34900.1, LOC_Os04g58030.1, LOC_Os04g58050.1, LOC_Os05g03490.1, LOC_Os05g03520.1, LOC_Os05g23450.2, LOC_Os06g08990.1, LOC_Os06g09020.1, LOC_Os07g45150.1, LOC_Os07g45340.1, LOC_Os09g33890.1, LOC_Os10g08610.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G205300, gene-BS78_07G002900 ... gene-BS78_07G003300, gene-BS78_10G276800, gene-BS78_10G276900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0101849, Pt_Chr0602412
Poaceae	Sporobolus alterniflorus	5	Chr19G002260, Chr24G015290, Chr27G015030, Chr27G015830 ... Chr28G008790
Poaceae	Thinopyrum elongatum	6	Tel2E01G890000, Tel2E01G890400, Tel3E01G168300 ... Tel3E01G508400, Tel4E01G175100, Tel4E01G176400
Poaceae	Triticum dicoccoides	3	gene_TRIDC3AG045890, gene_TRIDC3BG051990 ... gene_TRIDC4AG032840
Poaceae	Triticum aestivum	18	TraesCS2A02G001600.1, TraesCS2A02G543800.1 ... TraesCS2B02G020700.1.cds1, TraesCS2B02G116500.1, TraesCS2D02G001900.1.cds1, TraesCS2D02G525800.1, TraesCS3A02G096400.1.cds1, TraesCS3A02G320000.1.cds1, TraesCS3B02G112200.1.cds1, TraesCS3B02G346200.1.cds1, TraesCS3B02G346300.1.cds1, TraesCS3D02G096900.1.cds1, TraesCS4A02G206500.1.cds1, TraesCS4D02G106400.1.cds1, TraesCS4D02G106500.1, TraesCS6A02G317400.1.cds1, TraesCS6A02G317800.1.cds1, TraesCS6D02G296800.1.cds1