Basic Information
Locus ID:
AH01.5287
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 65130979 | 65132277 | - | AH01.5287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 46,379.23 Da | 42.16 | 73.36 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 167 | 7.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 293 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 332 | 0.0099 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 133 | 423 | 1.16E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 260 | 431 | 3.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 123 | 259 | 3.4E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 128 | 167 | 8.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 249 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 383 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 293 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 333 | 0.0034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 135 | 176 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 135 | 167 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 302 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 55 | 11.300346 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 296 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 332 | 9.171722 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 280 | 294 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 280 | 294 | 2.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 320 | 334 | 2.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 154 | 168 | 2.5E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 1.62E-55 |
| RefSeq | XP_004987175.1 | zinc finger CCCH domain-containing protein 48 [Setaria italica] | 4.43E-223 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 6.33E-66 | |
| TrEMBL | K4AKC3 | C3H1-type domain-containing protein OS=Setaria italica OX=4555 GN=101756504 PE=4 SV=1 | 1.0E-221 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology