halophFGD

Basic Information

Locus ID: AH01.5146

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Domain of unknown function DUF223

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH01	64096049	64100127	+	AH01.5146

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.33	86,733.64 Da	48.17	79.61	-0.78

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04481	RPA1_DBD_B_like	138	243	2.2781E-9	-
CDD	cd04480	RPA1_DBD_A_like	18	103	1.07477E-23	-
CDD	cd04476	RPA1_DBD_C	275	407	6.14753E-32	IPR013955
Pfam	PF02721	Domain of unknown function DUF223	41	110	3.0E-8	IPR003871
Pfam	PF08646	Replication factor-A C terminal domain	291	407	3.3E-19	IPR013955
Pfam	PF16900	Replication protein A OB domain	135	228	3.3E-7	IPR031657
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	267	438	5.14E-34	IPR012340
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	3	111	2.44E-18	IPR012340
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	135	245	3.47E-12	IPR012340
Gene3D	G3DSA:2.40.50.140	-	3	108	2.4E-23	-
Gene3D	G3DSA:2.40.50.140	-	255	431	3.7E-34	-
Gene3D	G3DSA:2.40.50.140	-	112	247	1.9E-19	-
MobiDBLite	mobidb-lite	consensus disorder prediction	523	550	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	551	571	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	523	572	-	-
Coils	Coil	Coil	530	550	-	-

KEGG Pathway

KO Term:

K07466 (replication factor A1)

Pathway:

ko03030 (DNA replication) map03030 (DNA replication) ko03420 (Nucleotide excision repair) map03420 (Nucleotide excision repair) ko03430 (Mismatch repair) map03430 (Mismatch repair) ko03440 (Homologous recombination) map03440 (Homologous recombination) ko03460 (Fanconi anemia pathway) map03460 (Fanconi anemia pathway)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039789813.1	replication protein A 70 kDa DNA-binding subunit B-like [Panicum virgatum]	1.09E-240
TrEMBL	A0A8T0Q0P6	Replication protein A 70 kDa DNA-binding subunit OS=Panicum virgatum OX=38727 GN=PVAP13_7NG171700 PE=3 SV=1	3.0E-264

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11242, gene_19988, gene_9588
Amaranthaceae	Atriplex hortensis	13	Ah001361, Ah001371, Ah002563, Ah006984, Ah006985, Ah007876 ... Ah010862, Ah025226, Ah029290, Ah030577, Ah037589, Ah038029, Ah038313
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg149, Sbi_jg150, Sbi_jg16705, Sbi_jg3120, Sbi_jg33012 ... Sbi_jg34953, Sbi_jg39132, Sbi_jg40907, Sbi_jg40945, Sbi_jg4372, Sbi_jg52704, Sbi_jg52799, Sbi_jg56535, Sbi_jg59927, Sbi_jg6013, Sbi_jg6051, Sbi_jg6079, Sbi_jg6080, Sbi_jg62897
Amaranthaceae	Salicornia europaea	16	Seu_jg10453, Seu_jg17430, Seu_jg17914, Seu_jg1932 ... Seu_jg19683, Seu_jg20729, Seu_jg21730, Seu_jg23726, Seu_jg24231, Seu_jg24232, Seu_jg25610, Seu_jg26476, Seu_jg28167, Seu_jg3128, Seu_jg5300, Seu_jg6452
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00024462
Amaranthaceae	Suaeda glauca	10	Sgl03380, Sgl08498, Sgl31135, Sgl31147, Sgl32416, Sgl36490 ... Sgl37710, Sgl44281, Sgl49042, Sgl74206
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005026, gene:ENSEOMG00000015694 ... gene:ENSEOMG00000015873, gene:ENSEOMG00000034435
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0003620, CQ.Regalona.r1.8BG0010240
Apiaceae	Apium graveolens	27	Ag10G01033, Ag10G01574, Ag10G01896, Ag11G03153, Ag11G04618 ... Ag1G01595, Ag1G01599, Ag2G00391, Ag2G01149, Ag2G01625, Ag3G01857, Ag3G01971, Ag3G02116, Ag3G02639, Ag3G02752, Ag4G02157, Ag5G01058, Ag5G01367, Ag6G02577, Ag7G00861, Ag7G00882, Ag9G01197, Ag9G02116, Ag9G02235, AgUnG00818, AgUnG01095, AgUnG01450
Arecaceae	Cocos nucifera	2	COCNU_13G005920, scaffold010294G000060
Poaceae	Echinochloa crus-galli	7	AH01.5146, BH01.1939, BH02.822, BH09.2202, BH09.2414 ... CH01.2160, CH02.811
Poaceae	Oryza coarctata	1	Oco15G006230
Poaceae	Oryza sativa	8	LOC_Os05g02080.1, LOC_Os11g01460.1, LOC_Os11g38310.1 ... LOC_Os11g41180.1, LOC_Os11g44840.1, LOC_Os11g47400.1, LOC_Os12g26670.1, LOC_Os12g38520.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G191500, gene-BS78_05G005400 ... gene-BS78_05G239400, gene-BS78_05G271300, gene-BS78_05G282000
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0201723, Pt_Chr0201724, Pt_Chr0201726, Pt_Chr0201806 ... Pt_Chr0501697, Pt_Chr0501742, Pt_Chr0602034
Poaceae	Sporobolus alterniflorus	2	Chr19G015510, Chr27G003730
Poaceae	Thinopyrum elongatum	10	Tel1E01G147700, Tel1E01G147800, Tel1E01G242200 ... Tel1E01G245800, Tel1E01G253400, Tel2E01G486300, Tel4E01G387800, Tel6E01G338100, Tel7E01G398200, Telscf1201G000300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1BG023090, gene_TRIDC2AG046570 ... gene_TRIDC3AG028860, gene_TRIDC5BG032950, gene_TRIDC6BG030650, gene_TRIDC7BG033130
Solanaceae	Lycium barbarum	3	gene-LOC132600651, gene-LOC132619582, gene-LOC132621884
Solanaceae	Solanum chilense	7	SOLCI000818800, SOLCI000928800, SOLCI004930500 ... SOLCI004985800, SOLCI005662500, SOLCI006437700, SOLCI007519000
Solanaceae	Solanum pennellii	6	gene-LOC107003768, gene-LOC107019434, gene-LOC107019527 ... gene-LOC107020428, gene-LOC107024868, gene-LOC114077490