Basic Information
Locus ID:
AH01.5029
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 63304519 | 63308576 | + | AH01.5029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 40,951.24 Da | 40.79 | 73.03 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 335 | 369 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 167 | 202 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 283 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 244 | 1.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 167 | 369 | 1.97E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 289 | 370 | 4.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 286 | 1.6E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 205 | 244 | 4.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 295 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 370 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 202 | 4.5E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 170 | 205 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 170 | 211 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 244 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 244 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 338 | 370 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 370 | 10.14085 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 231 | 245 | 4.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 357 | 370 | 4.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 189 | 203 | 4.4E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 1.06E-37 |
| RefSeq | XP_012698060.1 | transcriptional corepressor LEUNIG-like isoform X1 [Setaria italica] | 2.82E-172 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 1.05E-36 | |
| TrEMBL | A0A2T7CIT4 | LisH domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G647300 PE=4 SV=1 | 1.84E-170 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.5029 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0230570, gene-QOZ80_3BG0297310 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G512100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G000290, Chr07G000300 |