Basic Information
Locus ID:
AH01.5020
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 63268066 | 63271533 | + | AH01.5020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 76,077.94 Da | 62.84 | 64.16 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 618 | 658 | 1.90639E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 616 | 663 | 2.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 618 | 664 | 1.88E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 594 | 669 | 1.3E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 619 | 658 | 10.600894 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 320 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 1.06E-92 |
| RefSeq | XP_022685551.1 | uncharacterized protein LOC101779219 [Setaria italica] | 0 |
| TrEMBL | A0A0A9DTT5 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 1.28E-309 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology