Basic Information
Locus ID:
AH01.4976
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 62799940 | 62802822 | - | AH01.4976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 41,986.01 Da | 66.72 | 65.51 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 121 | 202 | 8.9E-17 | IPR008913 |
| Pfam | PF13445 | RING-type zinc-finger | 257 | 297 | 5.2E-7 | IPR027370 |
| Pfam | PF14599 | Zinc-ribbon | 304 | 362 | 5.0E-24 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 193 | 249 | 6.8E-18 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 302 | 5.65E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 116 | 191 | 2.35E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 322 | 1.1E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 328 | 369 | 5.4E-19 | - |
| SMART | SM00184 | ring_2 | 257 | 299 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 192 | 256 | 32.581814 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 257 | 299 | 11.795887 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 114 | 190 | 24.586294 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 49 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 2.79E-123 |
| RefSeq | XP_012698586.1 | E3 ubiquitin-protein ligase RZFP34 [Setaria italica] | 1.82E-178 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 2.68E-122 | |
| TrEMBL | K4ADU3 | CHY-type domain-containing protein OS=Setaria italica OX=4555 GN=101768671 PE=4 SV=1 | 4.11E-177 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology