Basic Information
Locus ID:
AH01.4964
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 62703710 | 62705693 | + | AH01.4964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.29 | 20,943.41 Da | 53.49 | 68.63 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 6.77136E-51 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 142 | 4.7E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 148 | 1.03E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 159 | 3.1E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 4.9E-51 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.729324 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 177 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 1.14E-105 |
| RefSeq | XP_025797799.1 | ubiquitin-conjugating enzyme E2 4-like [Panicum hallii] | 6.84E-126 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 1.09E-104 | |
| TrEMBL | A0A8T0N3M9 | UBC core domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG748200 PE=3 SV=1 | 1.55E-124 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology