Basic Information
Locus ID:
AH01.4948
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
WDR3
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 62533705 | 62545048 | - | AH01.4948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 228,651.73 Da | 42.75 | 88.16 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 388 | 683 | 3.5526E-54 | - |
| CDD | cd00200 | WD40 | 99 | 504 | 1.84512E-43 | - |
| Pfam | PF00646 | F-box domain | 1663 | 1699 | 6.6E-7 | IPR001810 |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 598 | 4.9E-5 | IPR001680 |
| Pfam | PF01535 | PPR repeat | 1131 | 1158 | 2.0E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1103 | 1129 | 0.33 | IPR002885 |
| Pfam | PF01344 | Kelch motif | 1789 | 1834 | 8.0E-12 | IPR006652 |
| Pfam | PF01535 | PPR repeat | 1202 | 1225 | 0.65 | IPR002885 |
| Pfam | PF00400 | WD domain, G-beta repeat | 646 | 683 | 5.4E-6 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 786 | 887 | 2.0E-18 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 218 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 177 | 3.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 65 | 93 | 0.016 | IPR001680 |
| Pfam | PF13041 | PPR repeat family | 1227 | 1271 | 1.5E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1328 | 1376 | 8.2E-8 | IPR002885 |
| Pfam | PF00400 | WD domain, G-beta repeat | 98 | 135 | 7.8E-5 | IPR001680 |
| Pfam | PF13041 | PPR repeat family | 1429 | 1476 | 8.5E-13 | IPR002885 |
| Pfam | PF01344 | Kelch motif | 1837 | 1885 | 4.3E-10 | IPR006652 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 38 | 688 | 6.83E-64 | IPR011047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 1713 | 2025 | 2.75E-38 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 1649 | 1699 | 3.6E-7 | IPR036047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 247 | 506 | 1.34E-22 | IPR036322 |
| Gene3D | G3DSA:2.120.10.80 | - | 1712 | 2008 | 8.7E-36 | IPR015915 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 221 | 7.4E-49 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 631 | 700 | 1.5E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 433 | 630 | 6.1E-42 | IPR015943 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1658 | 1711 | 2.3E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 233 | 432 | 9.9E-11 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1075 | 1181 | 3.2E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1289 | 1399 | 7.5E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1402 | 1633 | 2.6E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1182 | 1288 | 2.0E-18 | IPR011990 |
| SMART | SM00320 | WD40_4 | 602 | 641 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 417 | 0.03 | IPR001680 |
| SMART | SM00612 | kelc_smart | 1801 | 1847 | 2.3E-9 | IPR006652 |
| SMART | SM00256 | fbox_2 | 1663 | 1703 | 2.0E-7 | IPR001810 |
| SMART | SM00320 | WD40_4 | 96 | 135 | 8.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 557 | 0.0019 | IPR001680 |
| SMART | SM00612 | kelc_smart | 1848 | 1899 | 0.072 | IPR006652 |
| SMART | SM00320 | WD40_4 | 420 | 456 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 504 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 45 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 4.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 93 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 599 | 6.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 644 | 683 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 177 | 3.5E-7 | IPR001680 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1131 | 1157 | 1.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1230 | 1263 | 1.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1433 | 1465 | 4.9E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1129 | 1159 | 9.624079 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 80 | 102 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 221 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 567 | 608 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 609 | 641 | 9.151057 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 221 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1228 | 1262 | 11.651919 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 609 | 650 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1657 | 1706 | 11.140122 | IPR001810 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 103 | 136 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 180 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 186 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 651 | 683 | 11.286501 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 386 | 426 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 567 | 598 | 10.917412 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1430 | 1464 | 12.868624 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 103 | 136 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1329 | 1363 | 9.569272 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 651 | 683 | 13.616343 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 122 | 136 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 80 | 94 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 164 | 178 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 586 | 600 | 8.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 178 | 8.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 80 | 94 | 8.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 928 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 923 | - | - |
| Coils | Coil | Coil | 741 | 768 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21540.1 | transducin family protein / WD-40 repeat family protein. | 3.66E-212 |
| RefSeq | XP_004985673.1 | WD repeat-containing protein 3 [Setaria italica] | 0 |
| Q9LM55 | F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1 | 2.23E-157 | |
| TrEMBL | A0A5J9V0X7 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21137 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28461, jg30131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009268 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g222660 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41458, Sbi_jg48761 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27943 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005043 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55360, Sgl60707, Sgl61219 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019790, gene:ENSEOMG00000039938 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0000580, CQ.Regalona.r1.9AG0023890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30101850 |
| Apiaceae | Apium graveolens | 1 | Ag9G00339 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G006530, COCNU_05G006460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713316, gene-LOC120105101 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2639.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22415 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G22040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007536m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19550.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g029920.2N, BniB03g029930.2N, BniB04g037210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0649 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G0699, Cgl09G2154 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10770 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11036 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1003, evm.TU.LG08.1137 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002081 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2386, AH01.4948, BH01.2720, CH01.2900 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0121920, gene-QOZ80_2AG0134970 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0589440.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023156 |
| Poaceae | Oryza coarctata | 3 | Oco04G013000, Oco19G002860, Oco20G002990 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g36520.1, LOC_Os10g21930.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G258800, gene-BS78_04G172800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204263 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G007710, Chr09G013540, Chr13G009410, Chr13G017170 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G398600, Tel7E01G045300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG069730, gene_TRIDC6AG030790 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4A02G472100.1.cds1, TraesCS6B02G227500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb173330_P001, Zm00001eb182900_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13115, Zma_g16535 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1874, evm.TU.LG08.1030, evm.TU.LG15.1283 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1034, evm.TU.Scaffold_8_RagTag.705 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18808, nbisL1-mrna-9534 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19176, nbisL1-mrna-2144 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18251, nbisL1-mrna-6855 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.309, add.evm.TU.utg000018l.209 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003009, Maker00010634 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17889, nbisL1-mrna-20019 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20345, nbisL1-mrna-9909 |
| Salicaceae | Populus euphratica | 2 | populus_peu14659, populus_peu32323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598765 |
| Solanaceae | Solanum chilense | 1 | SOLCI005218600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005039 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3662 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1323 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29750.v3.1 |