Basic Information
Locus ID:
AH01.4629
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Tetratricopeptide repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 60020338 | 60033600 | + | AH01.4629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 155,890.58 Da | 56.56 | 83.66 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06662 | SURF1 | 70 | 330 | 1.6698E-42 | IPR002994 |
| Pfam | PF02104 | SURF1 family | 65 | 325 | 1.5E-46 | IPR002994 |
| SUPERFAMILY | SSF48452 | TPR-like | 1099 | 1376 | 2.73E-18 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 813 | 1145 | 5.35E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 933 | 1226 | 9.3E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 714 | 925 | 8.4E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1227 | 1382 | 3.9E-20 | IPR011990 |
| SMART | SM00028 | tpr_5 | 1344 | 1377 | 4.5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1240 | 1273 | 150.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 809 | 842 | 360.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1151 | 1184 | 130.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 1274 | 1307 | 0.54 | IPR019734 |
| ProSiteProfiles | PS50895 | SURF1 family profile. | 57 | 339 | 35.684994 | IPR002994 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 637 | - | - |
| Coils | Coil | Coil | 726 | 746 | - | - |
| Coils | Coil | Coil | 1160 | 1180 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27460.1 | no pollen germination related 1. encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. | 1.9E-214 |
| RefSeq | XP_004985317.1 | protein NPGR1 [Setaria italica] | 0 |
| Q9CB03 | Protein NPGR1 OS=Arabidopsis thaliana OX=3702 GN=NPGR1 PE=1 SV=1 | 1.82E-213 | |
| TrEMBL | A0A811MHP5 | SURF1-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS6187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4058 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10511 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006165 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16773, Sbi_jg16776, Sbi_jg61306 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23035 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008188 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24865, Sgl30012 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009064, gene:ENSEOMG00000028273 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0010820, CQ.Regalona.r1.4BG0010990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30149060 |
| Apiaceae | Apium graveolens | 2 | Ag2G01729, Ag7G02029 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717776 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2477.V1.1, AsparagusV1_03.2606.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G00687 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G48510.1, AT3G17910.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011732m.g.v1.0, Thhalv10021015m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046880.2N, BniB07g052290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2813 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2966 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g13760, gene.Cymno06g01720 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0153s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.97 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023402, Pov_00033497 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37934, Lb3G16628 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4629, Contig181.40 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0290380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398990.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070119 |
| Poaceae | Oryza coarctata | 2 | Oco05G005620, Oco06G005790 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G445400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101546, Pt_Chr0101560 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G026730, Chr04G001900, Chr07G009360, Chr12G012630 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G439300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006230, gene_TRIDC4BG045000 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G044900.2, TraesCS4B02G260400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb007820_P003, Zm00001eb099110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4155 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4207 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1912 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.688 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28674 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1677 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.442 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000355 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14461 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1650 |
| Salicaceae | Populus euphratica | 1 | populus_peu29694 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633190 |
| Solanaceae | Solanum chilense | 1 | SOLCI000573000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012562 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13927 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4313 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04040.v3.1 |