Basic Information
Locus ID:
AH01.4383
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 57694204 | 57695553 | + | AH01.4383 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 47,549.78 Da | 41.79 | 102.05 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 34 | 75 | 5.05514E-23 | - |
| Pfam | PF04564 | U-box domain | 30 | 101 | 6.9E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 104 | 6.28E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 209 | 426 | 1.4E-14 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 102 | 1.6E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 138 | 426 | 2.4E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 33 | 96 | 2.0E-32 | IPR003613 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | 6.0 | - |
| ProSiteProfiles | PS51698 | U-box domain profile. | 29 | 103 | 39.011303 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 7.88E-89 |
| RefSeq | XP_004985053.1 | U-box domain-containing protein 21 [Setaria italica] | 1.63E-281 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 7.61E-88 | |
| TrEMBL | K4AA08 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101783635 PE=4 SV=1 | 3.68E-280 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology