Basic Information
Locus ID:
AH01.4312
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 56959043 | 56966808 | + | AH01.4312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 142,013.67 Da | 46.30 | 79.78 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 646 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1074 | 1107 | 0.007 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 502 | 607 | 9.89E-8 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 1048 | 1252 | 1.02E-16 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 580 | 1112 | 2.35E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 705 | 842 | 3.7E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 985 | 1261 | 1.7E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 484 | 703 | 5.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 650 | 691 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1025 | 1065 | 1.6 | IPR001680 |
| SMART | SM00667 | Lish | 165 | 197 | 5.2E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 195 | 253 | 1.7E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 984 | 1022 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 539 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1158 | 1199 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 606 | 647 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 740 | 780 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1068 | 1107 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 694 | 737 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 600 | 22.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 613 | 656 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1075 | 1107 | 9.836508 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 195 | 253 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 165 | 197 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1075 | 1107 | 11.778342 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 634 | 648 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1253 | 1289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1264 | 1289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 108 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8I5I9 | TOPLESS OS=Panicum hallii OX=206008 GN=PAHAL_9G528200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology