Basic Information
Locus ID:
AH01.4299
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
GTPase-activator protein for Rho-like GTPases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 56827505 | 56841609 | + | AH01.4299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 96,074.62 Da | 55.75 | 71.94 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 60 | 159 | 9.60204E-13 | - |
| CDD | cd00159 | RhoGAP | 217 | 352 | 1.26792E-28 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 639 | 720 | 8.7E-20 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 217 | 358 | 2.3E-26 | IPR000198 |
| Pfam | PF00169 | PH domain | 59 | 163 | 1.7E-12 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 54 | 169 | 1.81E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 217 | 409 | 2.55E-30 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 46 | 165 | 1.1E-16 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 185 | 407 | 4.8E-37 | IPR008936 |
| SMART | SM00233 | PH_update | 58 | 166 | 4.7E-17 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 212 | 402 | 3.4E-19 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 206 | 405 | 26.178122 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 57 | 164 | 16.2752 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 806 | 827 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 452 | - | - |
| Coils | Coil | Coil | 145 | 165 | - | - |
| Coils | Coil | Coil | 604 | 624 | - | - |
| Coils | Coil | Coil | 629 | 670 | - | - |
| Coils | Coil | Coil | 696 | 723 | - | - |
| Coils | Coil | Coil | 829 | 849 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24580.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube. | 2.11E-196 |
| RefSeq | XP_025794996.1 | rho GTPase-activating protein REN1-like [Panicum hallii] | 0 |
| F4JQZ3 | Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2 | 2.03E-195 | |
| TrEMBL | A0A2S3ISA6 | Rho GTPase activation protein (RhoGAP) with PH domain OS=Panicum hallii OX=206008 GN=PAHAL_9G526800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology