Basic Information
Locus ID:
AH01.4286
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 56720137 | 56727605 | - | AH01.4286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 131,968.84 Da | 47.88 | 88.68 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 307 | 569 | 1.61901E-53 | - |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 814 | 898 | 2.7E-23 | IPR026960 |
| Pfam | PF01020 | Ribosomal L40e family | 1085 | 1105 | 4.3E-5 | IPR001975 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 313 | 568 | 1.3E-40 | IPR000477 |
| Pfam | PF00240 | Ubiquitin family | 1007 | 1075 | 7.9E-25 | IPR000626 |
| Pfam | PF01020 | Ribosomal L40e family | 84 | 107 | 4.8E-10 | IPR001975 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 248 | 541 | 1.04E-21 | IPR043502 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1003 | 1082 | 4.84E-24 | IPR029071 |
| Gene3D | G3DSA:4.10.1060.50 | - | 66 | 109 | 1.5E-10 | IPR038587 |
| Gene3D | G3DSA:3.10.20.90 | - | 999 | 1086 | 3.0E-32 | - |
| SMART | SM01377 | Ribosomal_L40e_3 | 70 | 114 | 2.9E-6 | IPR001975 |
| SMART | SM01377 | Ribosomal_L40e_3 | 1084 | 1161 | 0.74 | IPR001975 |
| SMART | SM00213 | ubq_7 | 1005 | 1077 | 2.0E-25 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1005 | 1081 | 21.9597 | IPR000626 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 293 | 569 | 17.341705 | IPR000477 |
| PRINTS | PR00348 | Ubiquitin signature | 1015 | 1035 | 6.9E-13 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 1058 | 1079 | 6.9E-13 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1162 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 5.0E-35 |
| RefSeq | XP_015619298.1 | uncharacterized protein LOC107279689 [Oryza sativa Japonica Group] | 9.47E-237 |
| P0CH11 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Chlamydomonas reinhardtii OX=3055 GN=UBI1 PE=1 SV=1 | 2.59E-34 | |
| TrEMBL | A0A8T0PVM4 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7NG186689 PE=4 SV=1 | 2.57E-310 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology