Basic Information
Locus ID:
AH01.4223
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 56055138 | 56058335 | + | AH01.4223 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 57,788.30 Da | 60.70 | 67.16 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 143 | 195 | 1.32836E-25 | - |
| Pfam | PF12315 | Protein DA1 | 292 | 505 | 3.4E-101 | IPR022087 |
| Pfam | PF00412 | LIM domain | 143 | 197 | 7.2E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 169 | 223 | 2.32E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 137 | 168 | 4.99E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 130 | 201 | 1.6E-12 | - |
| SMART | SM00132 | lim_4 | 142 | 194 | 2.5E-9 | IPR001781 |
| SMART | SM00726 | uim | 106 | 125 | 27.0 | IPR003903 |
| SMART | SM00726 | uim | 77 | 96 | 2.9 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 141 | 201 | 11.3653 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 143 | 177 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 109 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.3 | - | 4.24E-206 |
| RefSeq | XP_039826894.1 | protein DA1-related 2-like isoform X1 [Panicum virgatum] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 1.8900000000009E-312 | |
| TrEMBL | A0A8T0MZ65 | LIM zinc-binding domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG705400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology