Basic Information
Locus ID:
AH01.4191
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function (DUF1117)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 55632320 | 55633159 | - | AH01.4191 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 29,696.19 Da | 57.91 | 65.38 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 136 | 177 | 1.58132E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 7 | 36 | 2.1E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 135 | 177 | 2.6E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 193 | 276 | 4.8E-28 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 182 | 2.17E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 183 | 9.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 136 | 176 | 3.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 177 | 12.312242 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 1.91E-69 |
| RefSeq | XP_039786725.1 | E3 ubiquitin-protein ligase RDUF2-like [Panicum virgatum] | 2.63E-200 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 1.85E-68 | |
| TrEMBL | A0A835C9F6 | RING-type E3 ubiquitin transferase OS=Digitaria exilis OX=1010633 GN=HU200_025064 PE=4 SV=1 | 8.8E-201 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology