Basic Information
Locus ID:
AH01.4170
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 55460308 | 55464666 | - | AH01.4170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 89,413.51 Da | 49.36 | 89.90 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 409 | 451 | 7.55493E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 531 | 569 | 1.5E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 613 | 651 | 3.5E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 405 | 475 | 3.2E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 502 | 776 | 2.15E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 400 | 481 | 1.79E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 405 | 478 | 7.2E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 484 | 820 | 1.2E-51 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 162 | 275 | 1.1E-8 | IPR036537 |
| SMART | SM00185 | arm_5 | 488 | 528 | 57.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 408 | 471 | 4.2E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 612 | 652 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 738 | 778 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 653 | 693 | 8.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 571 | 611 | 7.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 530 | 570 | 8.2E-5 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 664 | 706 | 9.0124 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 623 | 665 | 9.4324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 541 | 583 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 404 | 478 | 45.672115 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 161 | - | - |
| Coils | Coil | Coil | 149 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 3.71E-137 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 6.8499999999996E-312 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 6.24E-141 | |
| TrEMBL | A0A3L6TPI4 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G10870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology