Basic Information
Locus ID:
AH01.4115
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 55032910 | 55038478 | - | AH01.4115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 147,479.78 Da | 42.91 | 103.57 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1104 | 1324 | 1.0867E-116 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 631 | 831 | 1.66304E-113 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 319 | 605 | 1.1597E-99 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1123 | 1271 | 1.7E-27 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 322 | 584 | 5.5E-19 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 941 | 1040 | 1.4E-10 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 649 | 783 | 2.7E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 926 | 1058 | 2.65E-15 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 308 | 613 | 2.09E-27 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 628 | 853 | 3.19E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1096 | 1337 | 1.97E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1091 | 1342 | 6.9E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 880 | 1065 | 3.5E-23 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 296 | 613 | 3.0E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 616 | 866 | 7.5E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1132 | 1324 | 9.8E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 658 | 831 | 2.0E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 318 | 597 | 27.832695 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 631 | 854 | 23.035986 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1106 | 1340 | 16.853544 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 941 | 1041 | 16.104858 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 756 | 770 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 913 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_025798382.1 | ABC transporter C family member 3-like [Panicum hallii] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CE68 | ABC transporter C family member 3 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G518300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology