Basic Information
Locus ID:
AH01.4089
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 54752521 | 54758298 | - | AH01.4089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 81,272.15 Da | 37.32 | 85.45 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 335 | 1.84216E-170 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 352 | 645 | 2.82213E-161 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 357 | 641 | 8.2E-44 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 351 | 645 | 2.62E-53 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 335 | 2.04E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 36 | 336 | 3.9E-31 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 350 | 646 | 7.9E-56 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 336 | 32.851551 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 352 | 646 | 41.263977 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 3.98E-250 |
| RefSeq | XP_034604102.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Setaria viridis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 3.83E-249 | |
| TrEMBL | A0A2T7CW90 | glycerophosphodiester phosphodiesterase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G178400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology