Basic Information
Locus ID:
AH01.4072
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolase family 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 54617826 | 54622841 | + | AH01.4072 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 88,667.87 Da | 41.32 | 86.00 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 459 | 543 | 1.4E-27 | IPR026960 |
| Pfam | PF00232 | Glycosyl hydrolase family 1 | 7 | 135 | 2.5E-54 | IPR001360 |
| Pfam | PF00232 | Glycosyl hydrolase family 1 | 574 | 779 | 1.4E-33 | IPR001360 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 7 | 156 | 3.69E-60 | IPR017853 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 574 | 779 | 6.15E-49 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 568 | 781 | 3.3E-58 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 4 | 161 | 1.7E-69 | - |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 727 | 735 | 4.0E-10 | IPR001360 |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 750 | 761 | 4.0E-10 | IPR001360 |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 648 | 662 | 4.0E-10 | IPR001360 |
| PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 771 | 784 | 4.0E-10 | IPR001360 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44480.1 | beta glucosidase 17. | 3.25E-60 |
| RefSeq | XP_035822097.1 | uncharacterized protein LOC103650051 isoform X1 [Zea mays] | 1.04E-166 |
| Q7XKV4 | Beta-glucosidase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU12 PE=1 SV=2 | 1.87E-132 | |
| TrEMBL | A0A1D6MNI8 | Reverse transcriptase domain-containing protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d040162 PE=4 SV=1 | 9.36E-161 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology