HalophFGD

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Basic Information
Locus ID: AH01.3923
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
AH01 53371959 53373110 + AH01.3923
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.64 42,517.07 Da 46.79 81.98 -0.16
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 7 46 6.02E-6 IPR036047
Gene3D G3DSA:1.20.1280.50 - 11 49 1.2E-5 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_039780846.1 uncharacterized protein LOC120648170 [Panicum virgatum] 1.19E-119
TrEMBL A0A3L6SA90 F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM02G28720 PE=4 SV=1 2.97E-146
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 23 AH01.3923, AH03.1073, AH03.1075, AH04.664, AH04.667 ...
AH04.673, AH05.433, AH08.2195, BH01.1079, BH01.4257, BH01.4266, BH03.1240, BH04.703, BH05.487, CH01.4555, CH03.1375, CH04.706, CH04.707, CH04.715, CH05.554, CH05.555, CH05.556, Contig1604.2
Poaceae Eleusine coracana subsp. coracana 11 gene-QOZ80_6AG0525670, gene-QOZ80_6AG0525690 ...
gene-QOZ80_6BG0479360, gene-QOZ80_8BG0667130, gene-QOZ80_8BG0667150, gene-QOZ80_9AG0676410, gene-QOZ80_9AG0676960, gene-QOZ80_9BG0700250, gene-QOZ80_9BG0700280, gene-QOZ80_9BG0700680, gene-QOZ80_9BG0700710
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.1HG0085110.1, HORVU.MOREX.r3.3HG0321190.1 ...
HORVU.MOREX.r3.3HG0328390.1.CDS1, HORVU.MOREX.r3.3HG0328450.1, HORVU.MOREX.r3.5HG0507210.1.CDS1
Poaceae Lolium multiflorum 15 gene-QYE76_000985, gene-QYE76_006996, gene-QYE76_007069 ...
gene-QYE76_041449, gene-QYE76_041477, gene-QYE76_044950, gene-QYE76_045255, gene-QYE76_056700, gene-QYE76_058336, gene-QYE76_058454, gene-QYE76_058766, gene-QYE76_059072, gene-QYE76_059073, gene-QYE76_059076, gene-QYE76_059078
Poaceae Oryza coarctata 4 Oco04G007650, Oco15G009840, Oco15G009850, Oco18G011940
Poaceae Oryza sativa 5 LOC_Os02g16740.1, LOC_Os02g16760.1, LOC_Os02g16770.1 ...
LOC_Os09g39050.1, LOC_Os09g39190.1
Poaceae Paspalum vaginatum 10 gene-BS78_03G190000, gene-BS78_03G190200, gene-BS78_K233200 ...
gene-BS78_05G100500, gene-BS78_05G102600, gene-BS78_05G102700, gene-BS78_05G107600, gene-BS78_K233300, gene-BS78_K241800, gene-BS78_K242000
Poaceae Puccinellia tenuiflora 4 Pt_Chr0600882, Pt_Chr0601124, Pt_Chr0700603, Pt_Chr0700604
Poaceae Sporobolus alterniflorus 2 Chr07G019720, Chr10G005970
Poaceae Thinopyrum elongatum 6 Tel2E01G813100, Tel3E01G890600, Tel3E01G891300 ...
Tel5E01G587900, Tel6E01G049100, Tel6E01G631000
Poaceae Triticum dicoccoides 14 gene_TRIDC3AG074560, gene_TRIDC3AG074600 ...
gene_TRIDC3AG074640, gene_TRIDC3BG060290, gene_TRIDC3BG084130, gene_TRIDC3BG085890, gene_TRIDC5AG052470, gene_TRIDC5BG057870, gene_TRIDC5BG057930, gene_TRIDC5BG067420, gene_TRIDC5BG067460, gene_TRIDC6AG059260, gene_TRIDC6BG002100, gene_TRIDC7BG076510
Poaceae Triticum aestivum 25 TraesCS2A02G006600.1.cds1, TraesCS2B02G506800.1.cds1 ...
TraesCS2B02G506900.1, TraesCS2D02G009300.1.cds1, TraesCS3B02G594900.1, TraesCS3B02G595000.1.cds1, TraesCS3B02G596100.1, TraesCS3D02G532200.1.cds1, TraesCS3D02G545400.1.cds1, TraesCS5A02G358800.1, TraesCS5B02G369700.1.cds1, TraesCS5B02G371000.1, TraesCS5D02G367800.1, TraesCS5D02G367900.1, TraesCS5D02G377500.1.cds1, TraesCS5D02G445700.1, TraesCS6A02G012200.1, TraesCS6B02G018600.1, TraesCS7A02G562200.1.cds1, TraesCS7B02G500500.1.cds1, TraesCS7D02G512300.1.cds1, TraesCS7D02G512400.1.cds1, TraesCSU02G055500.1, TraesCSU02G218400.1, TraesCSU02G221200.1
Poaceae Zoysia japonica 4 nbis-gene-27273, nbis-gene-41884, nbis-gene-49136 ...
nbis-gene-54856
Poaceae Zoysia macrostachya 3 Zma_g18560, Zma_g19347, Zma_g8005
Posidoniaceae Posidonia oceanica 1 gene.Posoc02g32710
Tamaricaceae Tamarix chinensis 1 TC12G1151
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