halophFGD

Basic Information

Locus ID: AH01.3856

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH01	52677008	52679944	-	AH01.3856

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.55	53,335.76 Da	64.41	77.33	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	352	478	9.16E-10	IPR036322
Gene3D	G3DSA:2.130.10.10	-	331	483	4.9E-39	IPR015943
MobiDBLite	mobidb-lite	consensus disorder prediction	211	282	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	145	170	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	215	282	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03364 (cell division cycle 20-like protein 1, cofactor of APC complex)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G22910.1	FIZZY-related 2.	1.86E-66
RefSeq	XP_025793598.1	protein FIZZY-RELATED 2-like [Panicum hallii]	1.52E-125
Swiss-Prot	Q9M7I2	B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1	7.6E-66
TrEMBL	A0A8T0P0G4	ANAPC4_WD40 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG543500 PE=3 SV=1	3.09E-124

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	AH01.2587, AH01.3856, AH05.3418