Basic Information
Locus ID:
AH01.3706
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 51223297 | 51223782 | - | AH01.3706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 16,903.33 Da | 47.52 | 90.93 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 91 | 134 | 1.57533E-17 | - |
| Pfam | PF13639 | Ring finger domain | 91 | 134 | 9.0E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 137 | 5.52E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 138 | 2.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 92 | 133 | 3.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 134 | 12.961374 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 5.54E-21 |
| RefSeq | XP_025798478.1 | RING-H2 finger protein ATL74-like [Panicum hallii] | 6.21E-83 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 5.41E-20 | |
| TrEMBL | A0A3L6TQ35 | E3 ubiquitin-protein ligase EL5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM01G14460 PE=4 SV=1 | 2.23E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology