Basic Information
Locus ID:
AH01.3642
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 50681497 | 50683928 | + | AH01.3642 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 29,487.61 Da | 50.39 | 50.23 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 145 | 189 | 8.9E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 18 | 92 | 4.6E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 194 | 248 | 1.5E-12 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 15 | 82 | 1.57E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 83 | 140 | 1.23E-18 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 197 | 1.35E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 208 | 1.1E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 216 | 252 | 4.1E-10 | - |
| SMART | SM00184 | ring_2 | 147 | 189 | 3.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 190 | 11.722122 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 80 | 25.717133 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 82 | 146 | 33.971954 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 2.77E-116 |
| RefSeq | XP_022679116.1 | E3 ubiquitin-protein ligase SRFP1 isoform X1 [Setaria italica] | 3.06E-190 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 3.48E-174 | |
| TrEMBL | K4AE18 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101763657 PE=4 SV=1 | 6.92E-189 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology