Basic Information
Locus ID:
AH01.3596
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 50214218 | 50223544 | + | AH01.3596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 111,751.49 Da | 55.02 | 78.77 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 339 | 494 | 7.04215E-38 | - |
| Pfam | PF00620 | RhoGAP domain | 339 | 483 | 1.1E-30 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 766 | 846 | 2.6E-21 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 228 | 289 | 5.37E-5 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 339 | 532 | 1.24E-32 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 310 | 532 | 2.9E-40 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 336 | 527 | 9.6E-26 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 330 | 530 | 30.435743 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 923 | 948 | - | - |
| Coils | Coil | Coil | 971 | 991 | - | - |
| Coils | Coil | Coil | 815 | 849 | - | - |
| Coils | Coil | Coil | 756 | 790 | - | - |
| Coils | Coil | Coil | 724 | 751 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 9.28E-299 |
| RefSeq | XP_025794933.1 | rho GTPase-activating protein 7-like isoform X2 [Panicum hallii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 8.92E-298 | |
| TrEMBL | A0A2T7CCH6 | Rho GTPase-activating protein 7-like OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G471200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology