Basic Information
Locus ID:
AH01.3535
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 49606392 | 49608569 | - | AH01.3535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 44,253.90 Da | 41.68 | 84.91 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 79 | 208 | 2.9E-30 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 236 | 390 | 4.51E-17 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 81 | 234 | 4.45E-36 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 233 | 387 | 2.6E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 226 | 317 | 2.6E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 76 | 223 | 1.5E-38 | - |
| SMART | SM00220 | serkin_6 | 16 | 208 | 1.9E-9 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 208 | 22.294277 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 5.85E-173 |
| RefSeq | XP_004984283.1 | calcium/calmodulin-dependent serine/threonine-protein kinase 1 [Setaria italica] | 5.04E-213 |
| Q10KY3 | Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CAMK1 PE=1 SV=1 | 8.84E-192 | |
| TrEMBL | K4A7I0 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101757290 PE=4 SV=1 | 1.14E-211 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology