Basic Information
Locus ID:
AH01.3386
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 47963654 | 47969002 | + | AH01.3386 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 77,741.51 Da | 39.36 | 85.38 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 422 | 690 | 4.99569E-85 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 1.2E-7 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 418 | 686 | 3.3E-38 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 117 | 174 | 4.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 243 | 3.67E-32 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 398 | 687 | 2.87E-66 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 378 | 493 | 8.7E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 256 | 4.2E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 494 | 704 | 4.4E-55 | - |
| SMART | SM00369 | LRR_typ_2 | 92 | 117 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 209 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 161 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 162 | 185 | 16.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 141 | 162 | 7.758159 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 416 | 690 | 33.304665 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 422 | 445 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 265 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14350.1 | STRUBBELIG-receptor family 7. | 5.64E-194 |
| RefSeq | XP_039785771.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Panicum virgatum] | 0 |
| Q9LUL4 | Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana OX=3702 GN=SRF7 PE=1 SV=1 | 5.43E-193 | |
| TrEMBL | A0A1E5WF79 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0002914 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology