Basic Information
Locus ID:
AH01.3385
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 47953498 | 47953971 | - | AH01.3385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 15,734.93 Da | 79.17 | 86.75 | 0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 52 | 106 | 4.9E-12 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 114 | 4.12E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 111 | 1.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 53 | 105 | 4.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 53 | 106 | 11.884405 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004984096.1 | RING-H2 finger protein ATL74 [Setaria italica] | 8.8E-62 |
| TrEMBL | A0A368SPS2 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_9G373500v2 PE=4 SV=1 | 1.99E-60 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3385, BH01.3682, CH01.3973 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0276980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178480.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067425 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g28040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G337000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G024620 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG051090 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G352900.1.cds1, TraesCS2B02G370700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb392800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43538 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3416 |