Basic Information
Locus ID:
AH01.3377
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 47881603 | 47882433 | - | AH01.3377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 27,550.99 Da | 55.12 | 73.80 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 98 | 141 | 3.77433E-17 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 6.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 146 | 3.3E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 146 | 5.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 140 | 9.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 141 | 12.592549 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 203 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 3.4E-22 |
| RefSeq | XP_034574031.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 4.44E-117 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 3.34E-21 | |
| TrEMBL | A0A4U6T3N3 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G378700v2 PE=4 SV=1 | 1.0E-115 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology