Basic Information
Locus ID:
AH01.3272
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 46683741 | 46684227 | + | AH01.3272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 10,632.01 Da | 55.66 | 63.01 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 23 | 64 | 4.16911E-25 | - |
| Pfam | PF04564 | U-box domain | 19 | 90 | 1.5E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 87 | 1.34E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 92 | 1.9E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 22 | 85 | 1.3E-23 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 18 | 92 | 31.810904 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01660.1 | RING/U-box superfamily protein. | 2.37E-24 |
| RefSeq | XP_021308267.1 | U-box domain-containing protein 57 [Sorghum bicolor] | 2.47E-45 |
| Q0DR28 | U-box domain-containing protein 57 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB57 PE=2 SV=1 | 7.02E-31 | |
| TrEMBL | A0A1Z5S8W2 | Serine/threonine-protein kinase OS=Sorghum bicolor OX=4558 GN=SORBI_3001G334400 PE=4 SV=1 | 5.18E-44 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026965 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3271, AH01.3272, BH01.3661, CH01.3844 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0462010 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0185430.1, HORVU.MOREX.r3.4HG0347270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066275 |
| Poaceae | Oryza coarctata | 2 | Oco05G016260, Oco06G016910 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g31000.1, LOC_Os03g31044.2, LOC_Os03g31070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302778, Pt_Chr0704227 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G013600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G154600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG056450, gene_TRIDC2BG059420 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G391300.1, TraesCS2B02G409700.1 ... |