Basic Information
Locus ID:
AH01.3243
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 46353018 | 46366757 | - | AH01.3243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 292,677.63 Da | 55.22 | 72.85 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 196 | 237 | 5.5E-10 | IPR001810 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1510 | 1575 | 1.9E-11 | IPR025312 |
| Pfam | PF02992 | Transposase family tnp2 | 981 | 1126 | 5.1E-50 | IPR004242 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1312 | 1356 | 2.0E-8 | IPR025452 |
| Pfam | PF13963 | Transposase-associated domain | 635 | 708 | 1.3E-17 | IPR029480 |
| SUPERFAMILY | SSF81383 | F-box domain | 194 | 287 | 1.31E-16 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 189 | 264 | 1.2E-11 | - |
| SMART | SM00256 | fbox_2 | 195 | 235 | 1.5E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 189 | 235 | 11.828977 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2370 | 2391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1722 | 1748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1920 | 1953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1929 | 1945 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2347 | 2463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1716 | 1766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1578 | 1597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1749 | 1763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2410 | 2463 | - | - |
| Coils | Coil | Coil | 2231 | 2265 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39250.1 | F-box family protein. | 1.37E-74 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q9FL82 | F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1 | 1.32E-73 | |
| TrEMBL | Q6AV59 | Putative transposase family tnp2 OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0101N11.2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |