Basic Information
Locus ID:
AH01.3234
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 46156928 | 46157500 | - | AH01.3234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 19,589.07 Da | 28.87 | 66.37 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 34 | 187 | 1.46958E-69 | - |
| Pfam | PF00314 | Thaumatin family | 38 | 164 | 3.0E-33 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 31 | 188 | 3.4E-46 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 32 | 188 | 2.1E-45 | IPR037176 |
| SMART | SM00205 | tha2 | 34 | 188 | 1.1E-30 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 169 | 190 | 4.0 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 2 | 167 | 6.5E-45 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 31 | 187 | 28.089111 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 87 | 116 | 2.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 33 | 45 | 2.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 178 | 187 | 2.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 53 | 62 | 2.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 75 | 86 | 2.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 125 | 141 | 2.2E-39 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77700.2 | - | 2.63E-36 |
| RefSeq | XP_025809288.1 | thaumatin-like pathogenesis-related protein 3 [Panicum hallii] | 1.62E-106 |
| P31110 | Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0628600 PE=1 SV=1 | 1.02E-60 | |
| TrEMBL | A0A2S3HG34 | Thaumatin-like protein OS=Panicum hallii OX=206008 GN=PAHAL_3G506700 PE=4 SV=1 | 3.67E-105 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology