Basic Information
Locus ID:
AH01.3149
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 45177078 | 45180933 | + | AH01.3149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 66,339.68 Da | 62.09 | 75.55 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 214 | 234 | 0.03 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 331 | 356 | 7.8E-5 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 148 | 200 | 5.6E-16 | - |
| Pfam | PF00023 | Ankyrin repeat | 288 | 318 | 3.4E-6 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 424 | 484 | 4.35E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 116 | 384 | 1.29E-50 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 105 | 249 | 8.3E-34 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 412 | 494 | 1.7E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 263 | 384 | 4.2E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 179 | 208 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 287 | 316 | 1.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 146 | 175 | 8.6E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 330 | 362 | 0.0048 | IPR002110 |
| SMART | SM00184 | ring_2 | 429 | 478 | 0.003 | IPR001841 |
| SMART | SM00248 | ANK_2a | 213 | 243 | 0.49 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 213 | 234 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 179 | 211 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 330 | 356 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 287 | 319 | 12.9031 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 213 | 234 | 9.118069 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 330 | 356 | 10.709951 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 146 | 177 | 14.265156 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 287 | 316 | 12.22224 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 429 | 479 | 9.789479 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 146 | 178 | 15.38713 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 444 | 453 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 147 | 162 | 2.1E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 303 | 317 | 2.1E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 96 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 7.76E-168 |
| RefSeq | XP_002465047.1 | probable E3 ubiquitin-protein ligase XBOS33 [Sorghum bicolor] | 2.10000000027E-315 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 3.46E-295 | |
| TrEMBL | K4A6X5 | RING-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology