Basic Information
Locus ID:
AH01.3086
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 44456977 | 44463212 | - | AH01.3086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 25,447.97 Da | 41.19 | 88.80 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 74 | 9.65189E-42 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.8E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 84 | 170 | 9.9E-23 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 84 | 5.76E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 1.8E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 3.8E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 13.92785 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.244343 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.5E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.5E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.5E-30 | IPR002100 |
| Coils | Coil | Coil | 87 | 107 | - | - |
| Coils | Coil | Coil | 143 | 173 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 7.74E-60 |
| RefSeq | XP_004983814.1 | MADS-box transcription factor 56 [Setaria italica] | 7.67E-132 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 3.82E-94 | |
| TrEMBL | A0A368SNQ2 | MADS-box protein OS=Setaria italica OX=4555 GN=SETIT_9G342700v2 PE=4 SV=1 | 1.73E-130 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology