Basic Information
Locus ID:
AH01.3068
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 44315226 | 44319979 | - | AH01.3068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 71,134.77 Da | 47.36 | 84.34 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 186 | 436 | 3.23518E-119 | - |
| CDD | cd00051 | EFh | 557 | 612 | 3.79878E-12 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 187 | 437 | 1.8E-64 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 551 | 612 | 8.7E-8 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 496 | 543 | 0.012 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 176 | 454 | 2.7E-73 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 475 | 614 | 1.45E-31 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 453 | 545 | 4.9E-41 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 176 | 268 | 2.5E-25 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 462 | 611 | 4.9E-41 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 270 | 449 | 5.4E-49 | - |
| SMART | SM00054 | efh_1 | 483 | 511 | 0.87 | IPR002048 |
| SMART | SM00054 | efh_1 | 552 | 580 | 50.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 586 | 614 | 0.071 | IPR002048 |
| SMART | SM00220 | serkin_6 | 187 | 437 | 1.3E-78 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 479 | 514 | 10.524363 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 582 | 617 | 9.352757 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 187 | 437 | 40.993561 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 193 | 220 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 306 | 318 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 35 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35310.1 | calmodulin-domain protein kinase 5. calmodulin-domain protein kinase CDPK isoform 5 (CPK5) | 5.6E-191 |
| RefSeq | XP_025795030.1 | calcium-dependent protein kinase 23-like [Panicum hallii] | 0 |
| P53682 | Calcium-dependent protein kinase 23 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK23 PE=1 SV=2 | 1.14E-265 | |
| TrEMBL | A0A1E5VUB4 | Calcium-dependent protein kinase isoform 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0010316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3068, BH01.3416, CH01.3657 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G300300 |
| Poaceae | Zea mays | 1 | Zm00001eb022180_P001 |