Basic Information
Locus ID:
AH01.3052
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 44202427 | 44202855 | - | AH01.3052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 15,006.07 Da | 27.81 | 98.24 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01806 | Ubl_NEDD8 | 64 | 137 | 5.16067E-40 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 64 | 135 | 2.9E-23 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 63 | 138 | 3.45E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 63 | 141 | 1.8E-29 | - |
| SMART | SM00213 | ubq_7 | 62 | 133 | 4.2E-21 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 64 | 137 | 24.093689 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 88 | 113 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 72 | 92 | 6.7E-19 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 114 | 135 | 6.7E-19 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 93 | 113 | 6.7E-19 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 8.8E-31 |
| RefSeq | XP_025798259.1 | NEDD8-like [Panicum hallii] | 2.22E-56 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 7.84E-30 | |
| TrEMBL | A0A3L6SI88 | Ubiquitin-NEDD8-like protein RUB2 OS=Panicum miliaceum OX=4540 GN=C2845_PM02G21210 PE=4 SV=1 | 5.01E-55 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plantaginaceae | Plantago ovata | 1 | Pov_00018702 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3052, BH01.3399, CH01.3639 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G299200 |