Basic Information
Locus ID:
AH01.3002
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
MURE
Description:
plastid fission
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 43520975 | 43528220 | + | AH01.3002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 122,930.32 Da | 52.17 | 87.17 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1053 | 1094 | 1.66112E-18 | - |
| CDD | cd01989 | STK_N | 728 | 840 | 6.27642E-33 | - |
| Pfam | PF08245 | Mur ligase middle domain | 333 | 525 | 4.2E-28 | IPR013221 |
| Pfam | PF02875 | Mur ligase family, glutamate ligase domain | 546 | 629 | 2.7E-11 | IPR004101 |
| Pfam | PF04564 | U-box domain | 1049 | 1120 | 7.9E-14 | IPR003613 |
| SUPERFAMILY | SSF53244 | MurD-like peptide ligases, peptide-binding domain | 546 | 702 | 1.63E-26 | IPR036615 |
| SUPERFAMILY | SSF63418 | MurE/MurF N-terminal domain | 225 | 325 | 1.44E-7 | IPR035911 |
| SUPERFAMILY | SSF53623 | MurD-like peptide ligases, catalytic domain | 330 | 542 | 1.98E-23 | IPR036565 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1044 | 1120 | 4.77E-20 | - |
| Gene3D | G3DSA:3.40.1390.10 | - | 226 | 323 | 5.5E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1048 | 1123 | 7.3E-22 | IPR013083 |
| Gene3D | G3DSA:3.40.1190.10 | - | 326 | 549 | 2.2E-29 | IPR036565 |
| Gene3D | G3DSA:3.90.190.20 | - | 551 | 728 | 1.3E-38 | IPR036615 |
| SMART | SM00504 | Ubox_2 | 1052 | 1115 | 4.9E-18 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1048 | 1122 | 21.231445 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 154 | - | - |
| Coils | Coil | Coil | 886 | 958 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63680.1 | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases. Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis. | 2.63E-219 |
| RefSeq | XP_039828112.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic [Panicum virgatum] | 0 |
| K7WCC7 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic OS=Zea mays OX=4577 GN=MURE PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MVJ0 | U-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS7794 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7624 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1824 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026559 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14744, Sbi_jg55521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26072 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023100 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34767, Sgl40137 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000736, gene:ENSEOMG00000005264 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0017820, CQ.Regalona.r1.6BG0018910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30104760, pistato.v30135950 |
| Apiaceae | Apium graveolens | 1 | Ag9G02796 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G011720, COCNU_08G010400, COCNU_10G008540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695983, gene-LOC103717440, gene-LOC120104388 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_07.2213.V1.1, AsparagusV1_07.2214.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G33313 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G63680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023292m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g00970.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g024040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0306 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0408s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g10940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11251, nbisL1-mrna-11253 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1418 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003200 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09280 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3002, BH01.3335, CH01.3581 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0115790, gene-QOZ80_2BG0169660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0055820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012479 |
| Poaceae | Oryza coarctata | 2 | Oco19G009560, Oco20G009430 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g40130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G293900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0503120, Pt_Chr0503148, Pt_Chr0503160, Pt_Chr0701884 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G004440, Chr13G020480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G357900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG031420, gene_TRIDC1BG036880 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G208400.1, TraesCS1B02G222400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb391750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47008 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15634 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.612, evm.TU.LG26.416 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.173 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22411 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4694 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20324, nbisL1-mrna-20325 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.387 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014280 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3528 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6688 |
| Salicaceae | Populus euphratica | 1 | populus_peu03573 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634909 |
| Solanaceae | Solanum chilense | 1 | SOLCI004163000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028715 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20586_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0220 |
| Zosteraceae | Zostera marina | 1 | Zosma03g26790.v3.1 |