Basic Information
Locus ID:
AH01.2975
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
TTG1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 43183923 | 43184634 | - | AH01.2975 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 14,313.87 Da | 31.69 | 83.44 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 126 | 1.05E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 127 | 3.5E-9 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24520.1 | Transducin/WD40 repeat-like superfamily protein. Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. | 1.26E-34 |
| RefSeq | XP_039854481.1 | protein TRANSPARENT TESTA GLABRA 1-like [Panicum virgatum] | 1.02E-63 |
| Q9XGN1 | Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana OX=3702 GN=TTG1 PE=1 SV=1 | 1.23E-33 | |
| TrEMBL | A0A3L6RUB3 | Tan1 OS=Panicum miliaceum OX=4540 GN=C2845_PM11G30060 PE=4 SV=1 | 1.44E-63 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology