Basic Information
Locus ID:
AH01.2804
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 40560773 | 40564878 | + | AH01.2804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 88,024.44 Da | 44.22 | 89.63 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 153 | 169 | 8.1E-6 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 7 | 123 | 6.1E-24 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 146 | 174 | 1.22E-7 | IPR036875 |
| SUPERFAMILY | SSF81383 | F-box domain | 424 | 500 | 2.62E-7 | IPR036047 |
| Gene3D | G3DSA:4.10.60.10 | - | 136 | 178 | 1.2E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 153 | 169 | 3.6E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 153 | 169 | 11.185619 | IPR001878 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039842105.1 | uncharacterized protein LOC120702385 [Panicum virgatum] | 1.71E-148 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 6.69E-39 | |
| TrEMBL | A0A5J9TP46 | DUF295 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_46730 PE=4 SV=1 | 1.54E-158 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology