Basic Information
Locus ID:
AH01.2747
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 39668811 | 39670100 | + | AH01.2747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 46,338.86 Da | 57.64 | 41.47 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 136 | 180 | 5.63347E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 137 | 178 | 6.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 183 | 4.57E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 192 | 1.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 138 | 178 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 138 | 179 | 13.831801 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 153 | 162 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 128 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 1.66E-30 |
| RefSeq | XP_025792922.1 | uncharacterized protein LOC112874004 [Panicum hallii] | 4.01E-223 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 1.33E-21 | |
| TrEMBL | A0A2S3IN94 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_9G366200 PE=4 SV=1 | 9.06E-222 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2747, BH01.3079 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118630, gene-QOZ80_2BG0172380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053920.2.CDS3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012989 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G270100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503437, Pt_Chr0503483 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021590, Chr09G006510, Chr13G018190, Chr15G017590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030050, gene_TRIDC1BG035550 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198000.1, TraesCS1B02G212700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39354 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13020 |