Basic Information
Locus ID:
AH01.2718
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 39276465 | 39279516 | - | AH01.2718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.95 | 73,056.44 Da | 70.99 | 85.81 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 285 | 323 | 7.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 282 | 340 | 1.7E-8 | IPR036047 |
| SMART | SM00256 | fbox_2 | 289 | 329 | 0.0015 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 284 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_014758656.1 | uncharacterized protein LOC100831682 [Brachypodium distachyon] | 3.76E-34 |
| TrEMBL | A0A3L6TG85 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G48260 PE=4 SV=1 | 4.55E-150 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2718, CH01.3268 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0172800 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011763 |