Basic Information
Locus ID:
AH01.2711
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 39070879 | 39110905 | + | AH01.2711 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 161,113.16 Da | 50.80 | 72.71 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 193 | 320 | 2.87853E-64 | - |
| CDD | cd14066 | STKc_IRAK | 1143 | 1401 | 2.16341E-92 | - |
| CDD | cd18635 | CD_CMT3_like | 450 | 504 | 2.81129E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 513 | 872 | 4.0E-33 | IPR001525 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1143 | 1337 | 8.1E-42 | IPR001245 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 451 | 504 | 1.7E-13 | IPR023780 |
| Pfam | PF01426 | BAH domain | 195 | 317 | 1.9E-12 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 350 | 875 | 2.91E-78 | IPR029063 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1143 | 1399 | 1.89E-69 | IPR011009 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 439 | 512 | 4.4E-16 | IPR016197 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1142 | 1211 | 1.4E-26 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 139 | 304 | 4.5E-55 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 352 | 893 | 3.5E-271 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 667 | 841 | 3.5E-271 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1212 | 1412 | 6.9E-55 | - |
| SMART | SM00439 | BAH_4 | 194 | 319 | 1.2E-18 | IPR001025 |
| SMART | SM00220 | serkin_6 | 1136 | 1399 | 9.4E-26 | IPR000719 |
| SMART | SM00298 | chromo_7 | 450 | 507 | 4.6E-11 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 451 | 505 | 14.240801 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 194 | 319 | 18.324505 | IPR001025 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1134 | 1405 | 33.46014 | IPR000719 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 350 | 882 | 46.205929 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 472 | 492 | - | IPR023779 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1255 | 1267 | - | IPR008271 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 519 | 531 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 562 | 576 | 4.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 351 | 367 | 4.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 608 | 621 | 4.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 960 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 937 | - | - |
| Coils | Coil | Coil | 18 | 40 | - | - |
| Coils | Coil | Coil | 95 | 122 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 1.07E-255 |
| RefSeq | XP_039784885.1 | DNA (cytosine-5)-methyltransferase 3-like isoform X2 [Panicum virgatum] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | K4A4T6 | DNA (cytosine-5-)-methyltransferase OS=Setaria italica OX=4555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology