halophFGD

Basic Information

Locus ID: AH01.2693

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Transposase family tnp2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH01	38689283	38693415	+	AH01.2693

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.83	80,258.80 Da	48.32	71.98	-0.56

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13952	Domain of unknown function (DUF4216)	530	594	6.6E-19	IPR025312
Pfam	PF02992	Transposase family tnp2	422	467	1.1E-14	IPR004242
Pfam	PF13963	Transposase-associated domain	143	214	3.1E-11	IPR029480
Coils	Coil	Coil	11	31	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_052156689.1	uncharacterized protein LOC127774470 [Oryza glaberrima]	1.74E-193
TrEMBL	Q2QUK0	Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g16000 PE=4 SV=1	8.55E-167

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH01.2693, CH05.4449
Poaceae	Lolium multiflorum	24	gene-QYE76_004977, gene-QYE76_006303, gene-QYE76_006527 ... gene-QYE76_006634, gene-QYE76_008934, gene-QYE76_009027, gene-QYE76_012065, gene-QYE76_012362, gene-QYE76_015021, gene-QYE76_019075, gene-QYE76_021235, gene-QYE76_025411, gene-QYE76_030123, gene-QYE76_032836, gene-QYE76_033543, gene-QYE76_034126, gene-QYE76_044278, gene-QYE76_045348, gene-QYE76_051297, gene-QYE76_064168, gene-QYE76_065763, gene-QYE76_066461, gene-QYE76_068712, gene-QYE76_069641