Basic Information
Locus ID:
AH01.2594
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 36479466 | 36490652 | - | AH01.2594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 113,614.78 Da | 32.78 | 84.35 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 55 | 332 | 6.45636E-174 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 373 | 465 | 1.1E-17 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 620 | 833 | 4.4E-53 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 56 | 368 | 1.2E-94 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 915 | 1020 | 1.8E-8 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 473 | 1023 | 1.55E-145 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 50 | 369 | 2.07E-110 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 372 | 467 | 3.27E-25 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1360 | - | 902 | 1023 | 9.1E-32 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 55 | 336 | 4.7E-118 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 481 | 592 | 4.9E-26 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 615 | 881 | 2.6E-103 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 416 | 471 | 1.1E-18 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 337 | 415 | 3.7E-30 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 373 | 447 | 3.6E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_039828828.1 | alpha-mannosidase-like [Panicum virgatum] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0MPY8 | Alpha-mannosidase OS=Panicum virgatum OX=38727 GN=PVAP13_9NG361100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology